Machine Learning Harnesses Molecular Dynamics to Discover New $\mu$ Opioid Chemotypes
Abstract
Computational chemists typically assay drug candidates by virtually screening compounds against crystal structures of a protein despite the fact that some targets, like the $\mu$ Opioid Receptor and other members of the GPCR family, traverse many non-crystallographic states. We discover new conformational states of $\mu OR$ with molecular dynamics simulation and then machine learn ligand-structure relationships to predict opioid ligand function. These artificial intelligence models identified a novel $\mu$ opioid chemotype.
- Publication:
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arXiv e-prints
- Pub Date:
- March 2018
- DOI:
- 10.48550/arXiv.1803.04479
- arXiv:
- arXiv:1803.04479
- Bibcode:
- 2018arXiv180304479F
- Keywords:
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- Quantitative Biology - Biomolecules;
- Statistics - Machine Learning
- E-Print:
- 28 pages, machine learning, computational biology, GPCRs, molecular dynamics, molecular docking, molecular simulation