A Brief Tutorial on Transformation Based Markov Chain Monte Carlo and Optimal Scaling of the Additive Transformation
Abstract
We consider the recently introduced Transformation-based Markov Chain Monte Carlo (TMCMC) (Dutta and Bhattacharya (2014)), a methodology that is designed to update all the parameters simultaneously using some simple deterministic transformation of a onedimensional random variable drawn from some arbitrary distribution on a relevant support. The additive transformation based TMCMC is similar in spirit to random walk Metropolis, except the fact that unlike the latter, additive TMCMC uses a single draw from a onedimensional proposal distribution to update the high-dimensional parameter. In this paper, we first provide a brief tutorial on TMCMC, exploring its connections and contrasts with various available MCMC methods. Then we study the diffusion limits of additive TMCMC under various set-ups ranging from the product structure of the target density to the case where the target is absolutely continuous with respect to a Gaussian measure; we also consider the additive TMCMC within Gibbs approach for all the above set-ups. These investigations lead to appropriate scaling of the one-dimensional proposal density. We also show that the optimal acceptance rate of additive TMCMC is 0.439 under all the aforementioned set-ups, in contrast with the well-established 0.234 acceptance rate associated with optimal random walk Metropolis algorithms under the same set-ups. We also elucidate the ramifications of our results and clear advantages of additive TMCMC over random walk Metropolis with ample simulation studies and Bayesian analysis of a real, spatial dataset with which 160 unknowns are associated.
- Publication:
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arXiv e-prints
- Pub Date:
- July 2013
- DOI:
- arXiv:
- arXiv:1307.1446
- Bibcode:
- 2013arXiv1307.1446D
- Keywords:
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- Statistics - Methodology;
- 60J05;
- 60J35;
- 62E20;
- 62F15
- E-Print:
- 61 pages, 22 figures, will appear in Brazilian Journal of Probability and Statistics, presented at PCM Gold Medal Award presentations 2013 at Indian Statistical Institute, Kolkata