Earth-Base: testing the temporal congruency of paleontological collections and geologic maps of North America
Abstract
Free and open source software and data facilitate novel research by allowing geoscientists to quickly and easily bring together disparate data that have been independently collected for many different purposes. The Earth-Base project brings together several datasets using a common space-time framework that is managed and analyzed using open source software. Earth-Base currently draws on stratigraphic, paleontologic, tectonic, geodynamic, seismic, botanical, hydrologic and cartographic data. Furthermore, Earth-Base is powered by RESTful data services operating on top of PostgreSQL and MySQL databases and the R programming environment, making much of the functionality accessible to third-parties even though the detailed data schemas are unknown to them. We demonstrate the scientific potential of Earth-Base and other FOSS by comparing the stated age of fossil collections to the age of the bedrock upon which they are geolocated. This analysis makes use of web services for the Paleobiology Database (PaleoDB), Macrostrat, the 2005 Geologic Map of North America (Garrity et al. 2009) and geologic maps of the conterminous United States. This analysis is a way to quickly assess the accuracy of temporal and spatial congruence of the paleontologic and geologic map datasets. We find that 56.1% of the 52,593 PaleoDB collections have temporally consistent ages with the bedrock upon which they are located based on the Geologic Map of North America. Surprisingly, fossil collections within the conterminous United States are more consistently located on bedrock with congruent geological ages, even though the USA maps are spatially and temporally more precise. Approximately 57% of the 37,344 PaleoDB collections in the USA are located on similarly aged geologic map units. Increased accuracy is attributed to the lumping of Pliocene and Quaternary geologic map units along the Atlantic and Gulf coastal plains in the Geologic Map of North America. The abundant Pliocene fossil collections are thus located on geologic map units that have an erroneous age designation of Quaternary. We also demonstrate the power of the R programming environment for performing analyses and making publication-quality maps for visualizing results.
- Publication:
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AGU Fall Meeting Abstracts
- Pub Date:
- December 2012
- Bibcode:
- 2012AGUFMIN12A..02H
- Keywords:
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- 0430 BIOGEOSCIENCES / Computational methods and data processing;
- 1970 INFORMATICS / Semantic web and semantic integration;
- 1980 INFORMATICS / Spatial analysis and representation;
- 1988 INFORMATICS / Temporal analysis and representation