Weighted-Codon-Usage Based Phylogeny In Ectocarpales
Abstract
We analyse forty seven chloroplastid genes of the large subunit of RuBisCO, from the Algal order Ectocarpales, sourced from GenBank. Codon-usage weighted by the nucleotide base bias defines our score called the Codon-Impact-Parameter. This score is used to obtain phylogenetic relations amongst the 47 Ectocarpales. We compare our classification with the ones done earlier.
- Publication:
-
arXiv e-prints
- Pub Date:
- June 2005
- DOI:
- 10.48550/arXiv.q-bio/0506003
- arXiv:
- arXiv:q-bio/0506003
- Bibcode:
- 2005q.bio.....6003D
- Keywords:
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- Quantitative Biology - Genomics;
- Quantitative Biology - Populations and Evolution
- E-Print:
- Journal of Bioscience, 30(5),699--709(2005)