Escaping free-energy minima
Abstract
We introduce a powerful method for exploring the properties of the multidimensional free energy surfaces (FESs) of complex many-body systems by means of coarse-grained non-Markovian dynamics in the space defined by a few collective coordinates. A characteristic feature of these dynamics is the presence of a history-dependent potential term that, in time, fills the minima in the FES, allowing the efficient exploration and accurate determination of the FES as a function of the collective coordinates. We demonstrate the usefulness of this approach in the case of the dissociation of a NaCl molecule in water and in the study of the conformational changes of a dialanine in solution.
- Publication:
-
Proceedings of the National Academy of Science
- Pub Date:
- October 2002
- DOI:
- 10.1073/pnas.202427399
- arXiv:
- arXiv:cond-mat/0208352
- Bibcode:
- 2002PNAS...9912562L
- Keywords:
-
- Chemistry;
- Condensed Matter - Statistical Mechanics;
- Condensed Matter - Soft Condensed Matter
- E-Print:
- 3 figures