SEM observation on microbial like structure in the ferromanganese crust from the western Pacific Magellan Seamount

Understanding the biogeochemical process in the Fe-Mn crust layer is important to reconstruct the paleo-environment when the Fe-Mn crust layer forms. Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM), Electron Energy Loss Spectroscopy (EELS), and Polymerase Chain Reaction (PCR) were utilized to determine the redox states of Fe/Mn and microbial diversity at each layer. Samples were dredged from the western Pacific Magellan Seamount (OSM11) that consists of five well-defined layers from the rim (L1) to the core (L5). Some microbial like structures of sheath-like with filaments (L1 - L3), capsule-shaped (L2), fossilized coccolith mounds with phosphatized globules (L4), and bean-shaped (L4) were detected in entire layers. The cross sectional observation of bean-shaped microbe like structures encrusted with Fe-vernadite (L3) by Scanning Transmission Electron Microscopy (STEM) and Focused Ion Beam (FIB) technique revealed 1-μm diameter cavity in the center and porous structures of encrusting Fe-vernadite in periphery. Moreover, the organic carbon in the center cavity compared with inorganic C (from carbonate) in periphery was differentiated by C-K edge EELS spectra, suggesting that the microbe used to occupy. Indeed, the PCR analysis indicated the presence of functional gene (cumA; 1056bp & coxC; 810bp) association with Mn & Fe oxidizer that promote the formation of the crust. The cloning and sequencing of DNA PCR fragments revealed the appearance of geobacter species in L3 (G. sulfurreducens and G. lovleyi). The DNA molecular biological analysis and SEM direct observations suggest the evidence of biotic process in the formation of Fe-Mn crust.