Use of dissolved inorganic carbon isotopes to track photosynthesis, respiration, and nitrification along a 56 mile transect in the Sacramento River and San Francisco Bay

A decline in phytoplankton stocks in the San Francisco Bay and Delta is thought to contribute to the pelagic organism decline observed over the past two decades. One factor controlling phytoplankton growth rate is the availability of nutrients. Although there is an excess of nutrients in the Bay and Delta, the type and relative abundance of nutrients is critical to phytoplankton growth. To evaluate the response of phytoplankton to nutrient sources and to better understand phytoplankton dynamics downstream, we tested the hypothesis that the δ¹³C values of dissolved inorganic carbon (DIC) along with conventional water chemistry analyses will record events such as increased nitrification (related to the Sacramento River Wastewater Treatment Plant ammonium input) and algal blooms, and reflect the balance between photosynthesis and bacterial respiration. Multiple parameters affect [DIC] and its δ¹³C, including DIC sources, pH, and biological processes. Consumption of CO₂ by phytoplankton during photosynthesis and by autotrophic bacteria during nitrification both result in increases in δ¹³C-DIC. However, photosynthesis and nitrification have very different relationships to chlorophyll and nutrient concentrations. The balance between heterotrophic bacterial respiration and photosynthesis should be reflected in trends in DIC, nutrient, and chlorophyll concentration, and δ¹³C-DIC. The δ¹³C of DIC should also be reflected in the δ¹³C of phytoplankton with approximately a 20 per mil fractionation. Significant deviation in the fractionation factor may indicate local variations in growth rate, nutrient availability, or speciation. Combined, these parameters should provide a gauge of the relative importance of the above mentioned processes. To test this hypothesis, we collected 19 water samples per cruise between July 2012 and July 2013 along a 56 mile transect between Rio Vista on the Sacramento River and San Francisco Bay near Angel Island during 8 cruises on the USGS RV Polaris. The samples were collected for DIC and particulate organic matter (POM, used as a proxy for phytoplankton) concentration and isotopic analysis. Our analyses were combined with water chemistry data provided by the USGS Water Quality of San Francisco Bay Program (http://sfbay.wr.usgs.gov/access/wqdata/index.html) . The results show a clear mixing trend between distinct freshwater and salt water end-members in terms of δ¹³C-DIC, δ¹³C-POM and concentration measurements. The baywater DIC endmember is produced largely through gas exchange with the atmosphere while the upstream endmember shows a significant component of CO₂ produced through heterotrophic bacterial respiration. Local deviations from the mixing trend indicate variations in the balance between heterotrophic and autotrophic processes. The upstream effects of nitrification are not readily apparent but may be masked by the effects of reduced growth rates of phytoplankton due to elevated ammonium concentrations. Outliers to the mixing trend suggest local effects of biological processes. Pending nitrate and ammonium δ¹⁵N data will help to clarify these processes.