Large amounts of soil carbon deposited in permafrost may be released due to deeper seasonal thawing under the climatic conditions projected for the future. An increase in the volume of the available organic material together with the higher ground temperatures may lead to enhanced emission of greenhouse gasses. Particular concerns are associated with methane, which has a much stronger greenhouse effect than an equal amount of CO2. Production of methane is favored in the wetlands, which occupy up to 0.7 million km2 in Russian permafrost regions and have accumulated about 50 Gt of carbon (Gt C). We used the permafrost model and several climatic scenarios to construct projections of the soil temperature and the depth of seasonal thawing. To evaluate the effect of such changes on the volume of the seasonally thawing organic material, we overlaid the permafrost projections on the digitized geographically referenced contours of 59 846 wetlands in the Russian Arctic. Results for the mid-21st century climate indicated up to 50% increase in the volume of organic substrate in the northernmost locations along the Arctic coast and in East Siberia, where wetlands are sparse, and a relatively small increase by 10% 15% in West Siberia, where wetlands occupy 50% 80% of the land. We developed a soil carbon model and used it to estimate the changes in the methane fluxes due to higher soil temperature and increased substrate availability. According to our results, by mid-21st century the annual net flux of methane from Russian permafrost regions may increase by 6 8 Mt, depending on climatic scenario. If other sinks and sources of methane remain unchanged, this may increase the overall content of methane in the atmosphere by approximately 100 Mt, or 0.04 ppm, and lead to 0.012 °C global temperature rise.