Origins of Chevron Rollovers in Non-Two-State Protein Folding Kinetics
Abstract
Chevron rollovers of some proteins imply that their logarithmic folding rates are nonlinear in native stability. This is predicted by lattice and continuum Gō models to arise from diminished accessibilities of the ground state from transiently populated compact conformations under strongly native conditions. Despite these models' native-centric interactions, the slowdown is due partly to kinetic trapping caused by some of the folding intermediates' non-native topologies. Notably, simple two-state folding kinetics of small single-domain proteins are not reproduced by common Gō-like schemes.
- Publication:
-
Physical Review Letters
- Pub Date:
- June 2003
- DOI:
- 10.1103/PhysRevLett.90.258104
- arXiv:
- arXiv:cond-mat/0302305
- Bibcode:
- 2003PhRvL..90y8104K
- Keywords:
-
- 87.15.Aa;
- 87.15.By;
- 87.15.Cc;
- 87.15.He;
- Theory and modeling;
- computer simulation;
- Structure and bonding;
- Folding and sequence analysis;
- Dynamics and conformational changes;
- Condensed Matter - Soft Condensed Matter;
- Quantitative Biology
- E-Print:
- 10 pages, 4 Postscript figures (will appear on PRL)