Structure of the conserved GTPase domain of the signal recognition particle
Abstract
The signal-recognition particle (SRP) and its receptor (SR) function in the co-translational targeting of nascent protein-ribosome complexes to the membrane translocation apparatus1. The SRP protein subunit (termed Ffh in bacteria) that recognizes the signal sequence of nascent polypeptides is a GTPase, as is the SR-α subunit (termed FtsY)2,3. Ffh and FtsY interact directly, each stimulating the GTP hydrolysis activity of the other4. The sequence of Ffh suggests three domains: an amino-terminal N domain of unknown function, a central GTPase G domain, and a methionine-rich M domain that binds both SRP RNA and signal peptides5,6. Sequence conservation suggests that structurally similar N and G domains are present in FtsY7,8. Here we report the structure of the nucleotide-free form of the NG fragment of Ffh. Consistent with a role for apo Ffh in protein targeting, the side chains of the empty active-site pocket form a tight network of interactions which may stabilize the nucleotide-free protein. The structural relationship between the two domains suggests that the N domain senses or controls the nucleotide occupancy of the GTPase domain. A structural subdomain unique to these evolutionarily conserved GTPases constitutes them as a distinct subfamily in the GTPase superfamily9.
- Publication:
-
Nature
- Pub Date:
- January 1997
- DOI:
- 10.1038/385361a0
- Bibcode:
- 1997Natur.385..361F